ark.phenotyping
=======================


ark.phenotyping.cell\_cluster\_utils
-------------------------------------------

.. automodule:: ark.phenotyping.cell_cluster_utils
   :members:
   :undoc-members:
   :show-inheritance:

ark.phenotyping.cell\_meta\_clustering
---------------------------------------------

.. automodule:: ark.phenotyping.cell_meta_clustering
   :members:
   :undoc-members:
   :show-inheritance:

ark.phenotyping.cell\_som\_clustering
--------------------------------------------

.. automodule:: ark.phenotyping.cell_som_clustering
   :members:
   :undoc-members:
   :show-inheritance:

ark.phenotyping.cluster\_helpers
---------------------------------------

.. automodule:: ark.phenotyping.cluster_helpers
   :members:
   :undoc-members:
   :show-inheritance:

ark.phenotyping.pixel\_cluster\_utils
--------------------------------------------

.. automodule:: ark.phenotyping.pixel_cluster_utils
   :members:
   :undoc-members:
   :show-inheritance:

ark.phenotyping.pixel\_meta\_clustering
----------------------------------------------

.. automodule:: ark.phenotyping.pixel_meta_clustering
   :members:
   :undoc-members:
   :show-inheritance:

ark.phenotyping.pixel\_som\_clustering
---------------------------------------------

.. automodule:: ark.phenotyping.pixel_som_clustering
   :members:
   :undoc-members:
   :show-inheritance:

ark.phenotyping.pixie\_preprocessing
-------------------------------------------

.. automodule:: ark.phenotyping.pixie_preprocessing
   :members:
   :undoc-members:
   :show-inheritance:

ark.phenotyping.post\_cluster\_utils
-------------------------------------------

.. automodule:: ark.phenotyping.post_cluster_utils
   :members:
   :undoc-members:
   :show-inheritance:

ark.phenotyping.weighted\_channel\_comp
----------------------------------------------

.. automodule:: ark.phenotyping.weighted_channel_comp
   :members:
   :undoc-members:
   :show-inheritance: