All modules for which code is available
- ark.analysis.cell_neighborhood_stats
- ark.analysis.dimensionality_reduction
- ark.analysis.neighborhood_analysis
- ark.analysis.spatial_analysis_utils
- ark.analysis.visualize
- ark.phenotyping.cell_cluster_utils
- ark.phenotyping.cell_meta_clustering
- ark.phenotyping.cell_som_clustering
- ark.phenotyping.cluster_helpers
- ark.phenotyping.pixel_cluster_utils
- ark.phenotyping.pixel_meta_clustering
- ark.phenotyping.pixel_som_clustering
- ark.phenotyping.pixie_preprocessing
- ark.phenotyping.post_cluster_utils
- ark.phenotyping.weighted_channel_comp
- ark.segmentation.ez_seg.composites
- ark.segmentation.ez_seg.ez_object_segmentation
- ark.segmentation.ez_seg.ez_seg_display
- ark.segmentation.ez_seg.ez_seg_utils
- ark.segmentation.ez_seg.merge_masks
- ark.segmentation.fiber_segmentation
- ark.segmentation.marker_quantification
- ark.segmentation.regionprops_extraction
- ark.segmentation.segmentation_utils
- ark.segmentation.signal_extraction
- ark.spLDA.processing
- ark.utils.data_utils
- ark.utils.deepcell_service_utils
- ark.utils.example_dataset
- ark.utils.masking_utils
- ark.utils.metacluster_remap_gui.colormap_helper
- ark.utils.metacluster_remap_gui.file_reader
- ark.utils.metacluster_remap_gui.metaclusterdata
- ark.utils.metacluster_remap_gui.metaclustergui
- ark.utils.metacluster_remap_gui.throttle
- ark.utils.metacluster_remap_gui.zscore_norm
- ark.utils.plot_utils
- ark.utils.spatial_lda_utils
- ipywidgets.Output
- numba